PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_F59D340A9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 377aa    MW: 43453.6 Da    PI: 7.7674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_F59D340A9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-13321091598
                            -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                     B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             + +p kf+++++g    s  ++le ++g+ ++++    +  +++vl++GW  Fv+  +Lk+g f+vF+++++s f  +v +f+
  Traes_5DS_F59D340A9.2  32 KMAIPQKFVDNFNGH--ISEVIKLEAPDGNIYNIQA--IRDLNKIVLGSGWGVFVSFYKLKAGYFLVFRYIRDSHF--KVLIFD 109
                            489******888666..6779***************..999999****************************9999..887775 PP

2B353.54.5e-171702501399
                            TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            ++ +++p kf++++ g    s  ++le ++g+ +++k+  +k  +++vl+ GW  F+++ +Lke D +vF+++g+s f  +v +f+ 
  Traes_5DS_F59D340A9.2 170 RQEMSIPQKFVNNFRGR--ISEVMKLEAPDGNIYNFKV--TKDLNKIVLRYGWAAFASDYQLKEHDLLVFRYIGDSHF--KVLIFDP 250
                            4569*******888766..6779***************..**********************************9999..9999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-1914109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2014113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.13718111IPR003340B3 DNA binding domain
CDDcd100176.32E-1719109No hitNo description
SMARTSM010193.3E-721111IPR003340B3 DNA binding domain
PfamPF023622.0E-1132108IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-22154253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-22155253IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.589158251IPR003340B3 DNA binding domain
CDDcd100171.40E-17159249No hitNo description
SMARTSM010199.9E-8161251IPR003340B3 DNA binding domain
PfamPF023621.1E-14171249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAPDQDYDQD NSHVDDTQKY FFKCMVGDFP EKMAIPQKFV DNFNGHISEV IKLEAPDGNI  60
YNIQAIRDLN KIVLGSGWGV FVSFYKLKAG YFLVFRYIRD SHFKVLIFDF GTCCEKEVFH  120
VLMNCGPDSQ EKESNSESHR RCELCDVHFY WHHLDDRQKH FLRLMVGDFR QEMSIPQKFV  180
NNFRGRISEV MKLEAPDGNI YNFKVTKDLN KIVLRYGWAA FASDYQLKEH DLLVFRYIGD  240
SHFKVLIFDP SGCEKQLFNI VLNHAPNVPK TCISHDRSFL RETRRRDCGS HDNNSRKTKK  300
MTPVDSPSPR SEGVTSPEVT MNSAGLREIT EPHYVLATGC NLTTAQKAEV DALVKKVRPV  360
IPFYITAMNK TSMSGSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014758592.10.0PREDICTED: B3 domain-containing protein Os12g0591400-like isoform X2
TrEMBLW5G4S40.0W5G4S4_WHEAT; Uncharacterized protein
STRINGMLOC_74632.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-19B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]